Dave,
I often used to cover my lens entering and exiting the water. On my old glass lens that was not an issue. With the acrylic dome, sediment, dried salt, etc that gets in the neoprene will copmpress immediately against the coating as you enter the water (so do not enter with the cover on). A plastic cover will be less likely to do this as it will not trap sediment. Exiting the water you have more freedom...but...again, sediment from you BC or in the water can scratch the lens. Really, there are no good solutions but to get medival in pretecting the Amphibico dome.
Bryce,
I sold my housing fairly quickly. Really the housing has a lot to offer but like anything has its issues. For me the issues happened to be things that I really cared about. It seems that Amphibico is finally taking many of these issues seriously (vignetting, alt port options, manual WB, new coating) but will not be addressing the coated acrylic port issue. If you can live with that, by all means stick with the housing.
Also, I was one of the unfortunate ones who it seemed the world was targeting my dome. Shipping the dome through customs over and over for replacement just wasn't worth it anymore. That combined with the other issues made it no longer usable for my purposes.
I have since purchased the L&M Housing. It is a really nice set up and so far I give it strong recomendations. L&M has provided me great customer service and have been very responsive. You can read my review on the housing on Wetpixl at ( ).
Hope this helps and Dave, don't worry, you'll get some awesome footage with your set-up. I would definitely pay the money and upgrade the port so it does not vignette and get the manual wb fix (if it is not ready, get the wags special).