Mark,
Check your contacts on the camera and lens to make they're not dirty. A microfiber cloth is good for removing grease, etc. that can screw up communication between your camera and lens. Make sure your lens is on AF and "full range", too.
For macro shooting I've always switched to center point AF, which has more sensitive X and Y sensors. Get an AF lock, quickly recompose and pull the trigger. Also, as macros like the 60mm have a much narrower field of view you have to practice putting the AF center cross hairs on something with different contrasts to achieve a fast, reliable focus lock.
For fish I always use the eye edge or even nostril. Start a bit farther away and then "jog" the AF lifting your finger off the trigger as you creep closer to your intended subject. You can (and SHOULD!) practice this on land until it becomes second nature with a macro.
All macro lenses will miss AF and then do that frustrating move, racking all the way out and back before you can start over trying to focus 
With practice you'll get more keepers......
Good luck!
dhaas