Hi Steve,
I think you are spot on with your suggestion of taking focus away from half shutter and using the AF-ON button for autofocus. I think this is a huge advantage as you no longer have switch between manual and autofocus on the CSM switch, thus eliminating an extra step. You also no longer need the use the AF lock because you are technically "locked" whenever the AF-ON button is not being pressed.
The only problem is that many housings either do not have a button for the AF-ON button or it is not ergonomically placed if it is available. The Light and Motion Titan D200 housing has the ability to let you choose whether the lever that you activate with your right thumb will press on the AF lock (the default setting) or can be switched to operate the AF-ON button by moving a rubber bumper on the inside of the back plate of the housing. The Subal housing also has a lever that you activate with your right thumb and will press on the AF lock, but with some custom modification, can be used to activate the AF-ON button. Some other housings that have a dedicated AF-ON button in addition to the AF lock button usually have a long reach that may require you to take your finger off of the shutter release in order to reach the AF-ON button.
It is very important to remember that this technique works only with certain lenses if you want to do manual focus. For example, the 60mm and old 105mm lenses will still need to have the ring on the lens swtiched if you want to manually focus the lens.
The technique works like a dream on the new 105 VR because this lens now features a Manual/ManualAuto switch on the lens. If you have the switch in the MA position, this means you can manually focus and also auto focus the lens without moving the switch on the lens or the CSM switch. If you have the 105VR give this technique a try on some flowers on land to get a feel for it--once you try it underwater you'll be addicted to it like crack.
I never use focus gears on wide angle setups, so everything I do for wide angle works fine.
By now the Canon users reading this have a smirk on their faces because they have been able to do this technique for years now with the star * button on the camera. They can disable 1/2 shutter from autofocus and reassign autofocus to the star * button. Most of the Canon housings activate the * button with the right thumb.
Good luck with trying this underwater!
Best regards,
Jim