Scott
Your question is loaded! Theoretically, if you know that you are going to use a lens at a close focus point then in a perfect world, the dome should be positioned so that it is optimised for that lens at the close focus point. This is because the lens components do shift as the lens focuses closer and alignment should be made with the components in this position.
However in practice, and especially with a zoom lens, you have already made a whole load of compromises with the dome position in relation to the lens, but.....
If you want the lens to focus closer the answer is extremely simple - use a higher powered diopter! Whilst either a +2 or +3 should help realign focus with a correctly set up 8" port, you can happily use a +4 which will curtail the maximum focus distance but should allow you to focus closer at the close end. Be aware though that the corners will suffer the closer you get and that, depending on the close focus of your lens, it might be possible to focus on the port itself, or if not the port then closer than the virtual image it creates, which will not look good!!!