Hello,
Here is what I think
1. Should I set the ISO to auto or a manual setting? (This can't be altered once the camera is in the housing)
>>>>I think you should set it to 50 or 100.
2. What is the best mode to shoot with? Aperature priority, Shutter priority, or P?
>>>It depends. I shoot in Av but I can see why you would want to set the time and then let the aperture be set automaticaly. Definitely not P
3. Because I dont have TTL, how do I adjust the strobe output to my camera settings?
>>>>You don't!
You will have to try settings.
Although ... I think if your strobe can take the preflash, you could do TTL and everything should be OK.
My strobe is crappy so I can't even set the power on it. I usualy set it to about 5 for aperture and then the time is usualy 1/60 or so.
Vlad