So the options seem to be either a fibre optic or Nikonos manual connection?
- what the heck does that mean?
- which is better?
- why two different ones?
Welcome to Wetpixel 
There are a few ways to connect a strobe to a housing (as you can guess). One is the traditional synch cord which gets screwed into the place on the housing (the bulkhead) and the other end gets screwed into the strobe. Internally in the housing there is a hot shoe connector which attaches to the camera. When the camera is triggered a signal fires the strobe(s). There are various types of connections with a traditional synch cord, including Nikonos and Ikelite cords. All strobes/housings do not have the same connection type (oh joy) so for instance Ikelite strobes have a specific cord to connect from one type of connection to another. Examples of various Ikelite Cords, for instance, can be seen On This Ikelite Page
Fibre optic is a connection that is not screwed in, it reads the light from the on-board flash on the camera and and the light goes through the cord to trigger a sensor on the strobes. If you take a look At This Image you will see the cord from the camera to the strobe.
Synch Cords require a bit more work with O-Rings and could be more prone to leaks, but they often will cycle quicker from shot-to-shot. Fiber Optics are less work, but may drain the camera battery quicker since the flash has to fire on the camera and may not cycle shot to shot as quickly. Sometimes they are a bit more flimsy and also there can be false flashes on the strobe.
As to options, synch cords have been around forever, fiber optics not as long, though fiber optics seem to be making a comeback.
Housings now offer options for one or more connections and on my next housing I will probably get fiber and Iklelite bulkhead connections (I prefer Ikelite connectors since they are easier for me to see and work with the way the ends are made. Nikonos are flat while the Ikelite are not, so it is easier to place them properly.) Various strobes may or may not support Fiber optic firing. See & Sea and Inon will have both regular synch cord connections and fiber optic connections, while others, such as Ikelite, require another piece to read the flash and pass it onto the strobe.
The large Sea & Sea (YS250 -http://www.seaandsea.com/) and Ikelite (DS200) strobes offer alot of power, but lighting a cave can be tricky. People use some triggered strobes (the ones that work fiber optically) to place in other divers hands, for instance, tho help with lighting. But it depends on the size of the cave and what you are trying to light of course....