Of the current cameras, the TRV-950/PDX10 is the popular one. The VX-2000 is probably better but more costly and twice as large (though the size is nice). Sony has announced the VX-2100 (but hasn't shipped) and some housings will need to change to accomodate its larger eyepiece. I doubt there are any upgradable housings for the VX-2000. The 2000 is the king of low-light, though, and Sony says the 2100 is significantly better in that regard.
For monitors, there are ones mounted on the back and ones on the top. I prefer the topmounts because they are more comfortable to use with wide angle. They aren't useful for macro, though, so you have to use the viewfinder for that. Backmounts are useful always but require a less comfortable position to use. The larger the housing, the more pronounced this is. You never see a housed broadcast camera with a monitor in the back, for example. Smaller rigs may be fine with the backmount style.
The typical multipurpose wetlens port will give you somewhere around 70-75 degrees. That may be wide enough. Wide angle ports will up that to 85-95 degrees. Superwides will go to 100-110 degrees but are really expensive. A flat port for macro will be available on anything and should be inexpensive. You will want to use diopters in combination with a flat port.
The ability to do custom white balance quickly and easily is very important on a higher end rig. This may be the difference between some rigs so look specifically at that. Taking a high quality 3CCD camera with quality optics underwater and relying on auto-white balance is not the right thing to do.
Look at the ability to mount filters. A permanent internal filter is the least flexible, obviously. Many offer an internal flip filter while others offer an external. External filters are hard to use with the widest lenses and are more easily damaged (and more costly). A housing that offers both allows you to use a diopter on the internal mount for even greater flexibility.
Lots of issues, I know, but the camera is only one factor. Ease of use, quality of the optics, and investment longevity are all important too.