Thanks everyone for your helpful replies. Here's some feedback.
jamesw - Your images are beautiful! I currently own 2 Ikelite substrobes, an MV (like the newer 50) and a 200. I have learned from an Ikelite representative that they WILL work with the Sony, but if I want to use them with the Nikon, I'll need to send them in for a minor electronics upgrade. That's because the Sony doesn't use a preflash allowing me to use their old-style TTL sensor to drive my existing strobes. The Nikon will drive the (modified) substrobes directly from the hotshoe connected to an Ikelite bulkhead fitting.
scorpio_fish - It wasn't clear in my original post, but I currently own just the camera and substrobes. I also have a spare battery, several memory sticks and other accessories that would have to be duplicated with any new non-Sony camera I purchase.
I've had a careful look at the Nikon 5000 and it looks like a very nice unit. Sabine - after looking at the specs, I'm no longer worried about the optics. I hate the shutter delay in the Sony, but have gotten used to it. Does the Nikon 5000 not have any delay?
So, here are the options:
1) Use the Sony and buy a housing, TTL sensor, TTL connecting cord and Inon W/A lens. I estimate that this will cost about $1300.
2) Buy a new Nikon 5000, housing w/dome port, TTL connecting cord, Nikon 19mm lens, smart media, extra battery, and electronic upgrades to substrobes - about $2300.
So, I'm vacillating over the extra $1k. Part of me wants to "cheap out" and go for the Sony package and upgrade in a few years when D SLRs become more affordable. Another benefit of this system and a "wet" W/A adapter lens is that I could switch back and forth between macro/normal and wide angle on the same dive. Another side of me appreciates that you have come up with a Nikon 5000 solution that works well, so I should just go for it.
Just to give you some background, I'm a pretty experienced Nikonos V photographer. And, at the risk of dating myself, I cut my U/W photographer teeth with a Nikonos III system (totally manual). When I was competing in underwater photo contests, I used manual control a lot, but for my scientific shots I rarely use the Nikonos V manual functions. I really like the way the TTL flash metering works in this system. It allows me to take repeated well-exposed shots while doing other work underwater. Other than for artistic expression is there a reason why manual control is so important in digital underwater photography? Doesn't the TTL sensor cause the shot to be properly exposed? The answer to these questions may just make the decision for me.