Although I still don't quite understand what the duct tape is used for. I have always found the bayonet fitting to be very secure.
Under certain circumstances such as that which Simon has mentioned, the dome port occasionally has a chance to twist in the bayonet mount to the point where it might disengage from the housing. The "duct" or "gaffa" tape is used to prevent the dome port from twisting in the bayonet mount by overlapping the tape on both sides of the bayonet mount to provide an extra level of security, vis-a-vis, an accidental disengagement of the dome port from the housing.
I occasionally use a small piece of duct tape as a marker to confirm the position of any dome port extensions being used on the housing. I always orient my dome port shade in exactly the same way every time I dive with my camera (Nikon D2x with no port lock on the housing). Dome port alignment is the very first and most important thing I check on the camera housing before entering the water.
Incidentally, it should be mentioned that this problem is not confined just to the Aquatica brand of underwater housings. I have seen dome ports disengage from a number of other housing on the market by other manufacturers.
IMO, Aquatica dome ports are robust, and are engineered and assembled extremely well. I had a fifteen to twenty pound lead weight from part of a Carolina dive boat rig smash into my dome port and shade while underwater in 6 to 8 foot seas once. The shade snapped, but the dome port survived the ordeal in fine shape.
I hope this post helps to clarify exactly how duct tape is used with the Aquatica dome port.