Sorry for taking so long to get back to this. I went on a short ski trip and returned to find a minor crisis( more on that on another thread ).
Craig, Phil does say what the test is. Here's his description of it again:
To measure noise levels we take a sequence of images of a GretagMacBeth ColorChecker chart (controlled artificial daylight lighting). The exposure is matched to the ISO (ie. ISO 200, 1/200 sec for consistency of exposure between cameras).
The image sequence is run through our own proprietary measurement tool which measures the standard deviation (normalized) of the middle gray patch (indicated by the red rectangle above)....
The numbers plotted are the standard deviation of the pixel values which is well defined. What he means by (normalized) can be ambiguous, but it's not important in fitting the measurement to noise models of the sensors, as I will try to explain.
For the low ISO points, the shot noise is equal to the square root of the number of electrons in the bucket, and that number is proportional to the exposure. So in this region the noise should go up sqrt(2) for every stop and doubles for every two stops.
Here's that plot again:

Here's some numbers that fit the shot noise model:
For the 1D and 10D
ISO Noise
100 1
200 1.4
400 2
800 2.8
For the 1D-Mk2
ISO Noise
50 0.55
100 0.8
200 1.1
400 1.5
800 2.2
1600 3.1
pretty close....
At higher ISO the fixed, exposure independent part should make the curves go up faster than the square root relationship unless a Noise Ninja like noise reduction algorithm kicks in. I think this is what happens in the 20D at ISO 1600 and 3200. The 1D and 1D-MK2 dose not have much of this type of noise reduction, but the 1Ds and D2H has it even at low ISO.
Alex, you got it right. A poor high ISO performance dose imply noisy dark regions at lower ISO. Because some cameras have strong noise reduction a low noise high ISO does not imply that you'll have cleaner dark places. You need to find out if the better high ISO performance is due to a lower noise sensor or stronger noise reduction.