With TCs it's very frustrating to rely on autofocus. The TC takes quite a bit of light away, and the focus system has trouble doing its work because of that.
Ive set up my camera to focus with the focus lock button, and to remove any focus operation from the release button. This can be done on my camera with menu items. So, i focus with the focus lock button until Im close to the framing of the object I want. Then I stop using AF, and move my whole housing back and forth slightly to get sharp focus. When I think ive got it, I press the release button (which has no AF function anymore) to shoot the image.
If you cant reprogram the function of your buttons, you can achieve similar results by focussing with your normal AF button, then holding the AF-LOCK key and moving your housing back and forth until you're happy, and then release the shutter. This is obviously more difficult as you need to hold 2 buttons.
Ive come to rely on this mix of AF and MF a lot. I like that I can just AF immediately of something happens, but go MF if I want, without having to flip any gears or whatever.
Cor