I've had a freezing issue on my A7c with the 90mm and diopter, but only once with underwater so far... It was on an inon-67 which I have had for a mere 9months, but had it freeze once if I recall and never had a freeze on an inon-167.
However, on land I also use the A7c with 90mm macro and a Raynox DCR-250 diopter (a great and inexpensive diopter if you excuse the looks) which has caused the camera to freeze on a handful of occasions while shooting bugs and other wild macro subjects over the past 2 years. I usually use DMF or AF-S with back button focusing for macro with the lens limited to 29-50cm. I also you the old rocking method to regain focus and cannot remember the issue with these shots.
It's not a huge issue and generally hasn't happened while firing a stream of shots, it is usually the first focus shot or when I or the subject moves and I need to refocus.
Being in IT I use standard IT solution 3 - Switch it off, wait a few seconds and turn it on again. It is best to turn it on without a diopter on I found.
I also find the Raynox need to be spotless and try to aviod any vinyetting with the raynox or the lens/camera af gets confused.
So would suggets it is not down SD cards or housing or even solely an uw issue but maybe a confussion of the af system.
As a side note when the lens limiter isn't set on I cannot remember this happening from memory, although AF takes longer.
It doesn't deter me from the system or lens, as nothing is perfect.