In my experiences with SWV, multiple dive trips to Sipadan itself are rare. You aren't going to be given an option to dive as Alex suggests unless you are a photo pro with your own boat. If you are drift diving Barracuda Point, you probably aren't going to want to be set up for ambient, HDR photography. I've been to SWV 7 times and, frankly, I've rarely gotten the opportunity to dive places that Alex suggests and I've never been afforded the luxury of dictating how the other 7 divers sharing my boat will dive. If I got to dive Sipadan Island all day I might be more will to forego strobes, too.
I also don't agree with the rational for why magic filters aren't suitable for use with strobes. We never adjust filtration on strobes based on depth just as we don't adjust strobe light in general based on depth. When we use strobes, we accept that we can't control the balance of light in a mixed light situation and it makes no sense to suggest that now we must just because of a particular filter. Doing so suggests that complimentary filters can never be made to work.
Accept, though, that you white balance to ambient without strobes and white balance to strobe with mixed. The results will be different but you can go on a dive prepared to do both.
Strobe filters selected to match a lens filter can be fixed since the lens filter is fixed. Also, you don't have to provide an exact match to the lens filter. Warming/cooling effects aren't critical, color balance is.